This study reports six patients with diabetes from three families carrying WFS1 variants, including three novel mutations. A rare manifestation of dilated cardiomyopathy was identified in one patient, and brain atrophy was detected on MRI at age 7 years and 3 months, the earliest reported. RNA sequencing revealed differentially expressed genes enriched in immune-related pathways and abnormal splicing of HLA-DRB1, suggesting a potential modifier role in diabetes pathogenesis.