This study investigates three thiosemicarbazide derivatives (compounds 1–3) as dual inhibitors of topoisomerase IIα and IDO-1 in breast cancer cells. The compounds selectively suppressed growth of MCF-7 and MDA-MB-231 cells, induced apoptosis via caspase-8 and caspase-9 pathways, and caused S-phase cell cycle arrest. They also inhibited ABC transporters (MDR1, MRP1/2, BCRP) and showed favorable ADME-Tox profiles with no significant hemolytic activity or CYP3A4/CYP2D6 inhibition, suggesting potential as drug candidates for breast cancer treatment.