This pooled analysis of 53 critically ill neonates with systemic candidiasis found that high-dose micafungin (8–15 mg/kg/day) achieves therapeutic plasma and cerebrospinal fluid concentrations, with higher clearance and shorter half-life in younger infants. The drug crossed the blood–brain barrier at these doses, and microbiological success was achieved in 83.3% of cases with only transient, non-serious liver enzyme elevations. These findings support the use of higher micafungin doses in neonates and young infants, a population where optimal antifungal dosing has been uncertain.