**Background:** Melatonin, a pineal gland hormone, regulates circadian rhythm and has shown potential to improve glycolipid metabolism. While melatonin is known to influence gut microbiota and glucose homeostasis via receptor signaling pathways, the contribution of gut microbiota modulation to melatonin's glucose-lowering effects in diabetes had not been comprehensively investigated. Short-chain fatty acids (SCFAs), key gut microbiota metabolites, have conflicting roles in metabolic health—some studies suggest they are beneficial, while others indicate overproduction may be detrimental in obesity and diabetes.
**Methods:** Ten-week-old male db/db mice (leptin receptor-deficient type 2 diabetes model) were divided into three groups (n=6 per group): control (plain water), low-dose melatonin (0.25 mg/mL, ~65 mg/kg/day), and high-dose melatonin (0.50 mg/mL, ~130 mg/kg/day) administered via drinking water for 12 weeks. Six age-matched wild-type db/m mice served as standard controls. Fluid intake, urine output, and food intake were measured weekly. Fasting blood glucose (FBG) was measured every 6 weeks. At week 12, insulin tolerance test (ITT) was performed (0.3 U/kg insulin, intraperitoneal). Serum insulin, HbA1c, and lipid profiles (TC, TG, HDL-C, LDL-C) were measured. HOMA-IR was calculated as [Glucose (mmol/L) × Insulin (mU/L)] ÷ 22.5. Fecal SCFAs (acetic, butyric, isovaleric, caproic, isobutyric, valeric, propionic acids) were quantified by GC-MS. Gut microbiota was profiled by 16S rRNA gene sequencing (V3+V4 regions) on NovaSeq6000. Hepatic mRNA expression of gluconeogenic genes (FBP1, Foxo1α, TXNIP, PEPCK, PEPCK1, G6Pc, Trx1) was measured by qRT-PCR. Statistical analysis used two-way ANOVA with post-hoc Bonferroni or Student's t-test; Pearson correlation analysis was performed for associations among microbiota, SCFAs, and diabetes parameters.
**Key Results:** Melatonin significantly reduced fluid intake and urine output in db/db mice without affecting food intake or body weight. High-dose melatonin (M2) significantly improved insulin sensitivity, reflected by decreased HOMA-IR index and reduced AUC of ITT. FBG and HbA1c levels were significantly lowered in both melatonin-treated groups. Serum TC, TG, HDL-C, and LDL-C were elevated in db/db mice versus db/m mice, and melatonin did not prevent these elevations. At the hepatic level, melatonin downregulated mRNA expression of gluconeogenic genes: FBP1, Foxo1α, Trx1, TXNIP, PEPCK1, PEPCK, and G6Pc. Gut microbiota analysis showed that melatonin altered microbial community structure (beta-diversity) without significantly changing alpha-diversity. High-dose melatonin significantly reduced Lachnospiraceae family and unidentified_Lachnospiraceae genus (SCFA-producing bacteria), increased Parabacteroides (including P. goldsteinii), increased Bacteroides (including B. stercorirosoris and B. sartorii), reduced Dubosiella, and increased Alistipes. Fecal SCFA analysis revealed that acetic acid (the most abundant SCFA) was significantly increased in db/db mice versus db/m mice; high-dose melatonin significantly decreased acetic acid, butyric acid, isovaleric acid, caproic acid, isobutyric acid, and total SCFAs. Low-dose melatonin showed similar trends but did not reach statistical significance. Correlation analysis demonstrated that acetic acid and total SCFA levels were positively correlated with HOMA-IR index (acetic acid: p<.05; total SCFAs: p<.01) and FBG levels (acetic acid: p<.05; total SCFAs: p<.01). Specific SCFAs showed both positive and negative correlations with various bacterial taxa at order and species levels.
**Clinical Implications:** This study provides evidence that melatonin supplementation improves glucose homeostasis in a type 2 diabetes model through mechanisms involving gut microbiota reprogramming and reduced fecal SCFA levels, particularly acetic acid and total SCFAs. The positive correlation between fecal SCFAs and diabetes parameters (HOMA-IR, FBG) suggests that in hyperglycemic conditions, overproduction of SCFAs may be deleterious, and reducing SCFA levels could be beneficial—contrasting with findings in dietary fiber supplementation studies where SCFA deficiency exists. These results support the potential of melatonin as an adjunctive therapy for type 2 diabetes, though the authors acknowledge limitations including lack of data on melatonin/metabolite concentrations in organs and blood, absence of germ-free or antibiotic-treated animal experiments to establish causality, and the need to investigate glucagon's counterregulatory role. The high safety profile of melatonin and its potential synergistic effects with polyphenols (e.g., EGCG) are noted as promising areas for future research.