This case report describes a 6-week-old infant with drug-resistant epilepsy who developed a severe stool bezoar (fecal impaction) requiring surgical removal after initiation of a ketogenic diet (KD) with a high 4.5:1 ketogenic ratio. The bezoar caused colonic erosion, abdominal compartment syndrome, and acute kidney injury, necessitating a right hemicolectomy and temporary ileostomy. Clinicians should be aware that KD, particularly at high ratios in very young infants, may lead to life-threatening gastrointestinal complications beyond the commonly reported mild feed intolerance.