This case report describes a child with congenital myotonic dystrophy who developed progressive cholestatic liver disease due to combined heterozygous mutations in ATP8B1 and ABCB4 genes, along with intestinal failure-associated liver disease. The patient underwent successful liver transplantation at 4 years 9 months and had normal graft function 7 years post-transplant. This highlights a rare but important association between congenital myotonic dystrophy and progressive liver disease that can be managed with transplantation.