**Background:** Food allergies are a growing public health concern, affecting 3–6% of children in developed countries. Gut microbiota dysbiosis has been implicated in food allergy pathogenesis. Prebiotic fructans, such as short-chain 1-kestose (Kes, degree of polymerization [DP]=3) and long-chain inulin (Inu, DP up to 60), may modulate the microbiota and immune responses. This study hypothesized that combined intake of Kes and Inu would have stronger food allergy-preventive effects than either alone, due to different mechanisms.
**Methods:** Twenty-eight 5-week-old female BALB/c mice were divided into five groups: control (Ctrl, n=5), OVA-induced allergy (OVA, n=5), OVA + Kes (Kes, n=6), OVA + Inu (Inu, n=6), and OVA + Kes+Inu (Kes+Inu, n=6). Mice were fed experimental diets (AIN-93G-based) for 8 weeks, with 5% cellulose replaced by 5% Kes, 5% Inu, or 2.5% Kes+2.5% Inu. Allergy was induced by intraperitoneal OVA injections (100 µg OVA + alum at week 2, then 50 µg OVA + alum at weeks 4–8). At week 8, mice were orally challenged with 50 mg OVA. Allergic symptoms were scored (0–5), rectal temperature measured, and serum and fecal samples collected for ELISA (OVA-specific IgE, IgA, total IgA). Peyer's patches were analyzed for cytokine mRNA (IL-2, IL-4, IL-6, IL-10) by RT-qPCR. Fecal microbiota was profiled by 16S rRNA amplicon sequencing (V3-V4 region, Illumina MiSeq). GH32 gene copy numbers of Parabacteroides distasonis and P. goldsteinii were quantified by qPCR. Enzymatic activity of GH32 enzymes was tested using E. coli surface display. Cecal short-chain fatty acids (SCFAs: acetate, propionate, n-butyrate) and lactate were measured by HPLC.
**Key Results:**
- **Allergy scores:** OVA group had significantly higher scores than Ctrl (P<0.0001). All fructan groups (Kes, Inu, Kes+Inu) had significantly lower scores vs. OVA (P<0.05 to P<0.0001). The Kes+Inu group showed the most pronounced suppression.
- **Rectal temperature:** OVA group had a significant decrease (P<0.0001 vs. Ctrl). Kes and Kes+Inu groups significantly attenuated the drop (P<0.05 vs. OVA).
- **Immunoglobulins:** OVA-specific IgE and IgA were significantly increased in OVA group (P<0.0001 vs. Ctrl) and significantly suppressed by all fructan treatments (P<0.05 to P<0.0001). Total IgA was significantly decreased in OVA group (P<0.05 vs. Ctrl) and significantly restored only in Kes+Inu group (P<0.05 vs. OVA).
- **Cytokines:** IL-4 mRNA was significantly increased in OVA group (P<0.0001 vs. Ctrl) and significantly suppressed by all fructan groups (P<0.05 to P<0.0001). IL-10 mRNA was not different between OVA and Ctrl, but was significantly increased in Kes and Kes+Inu groups (P<0.05 vs. OVA). IL-2 and IL-6 showed no significant differences.
- **Gut microbiota:** Alpha diversity (Shannon index) was significantly reduced in all fructan groups vs. OVA (P<0.05 to P<0.01). Beta diversity (weighted UniFrac) showed significant separation between Ctrl and OVA (P=0.006) and between OVA and each fructan group (Kes P=0.006, Inu P=0.003, Kes+Inu P=0.004). At phylum level, OVA group had significantly lower Bacteroidota and higher Firmicutes vs. Ctrl. Within Bacteroidota, genera Parabacteroides B 862,066 and Alloprevotella were significantly reduced in OVA group (P<0.05) and restored in fructan groups, especially Kes-fed groups (P<0.05 to P<0.001). P. distasonis abundance was significantly increased in Kes and Kes+Inu groups (P<0.05 vs. OVA); P. goldsteinii was significantly increased in Inu and Kes+Inu groups (P<0.05 vs. OVA).
- **GH32 gene copy numbers:** GH32 copies of P. distasonis were significantly increased in Kes and Kes+Inu groups (P<0.05 vs. OVA); GH32 copies of P. goldsteinii were significantly increased in Inu and Kes+Inu groups (P<0.05 vs. OVA). Enzymatic assays confirmed that GH32 from P. distasonis degraded Kes, and GH32 from P. goldsteinii degraded Inu.
- **SCFAs and lactate:** Acetate was significantly increased in Kes+Inu group (P<0.05 vs. OVA). Propionate was significantly increased in Kes group (P<0.05 vs. OVA). Lactate was significantly increased in Inu and Kes+Inu groups (P<0.05 vs. OVA). n-Butyrate showed no significant changes.
**Clinical Implications:** This study demonstrates that combined intake of short and long fructans (Kes+Inu) provides superior food allergy prevention compared to single fructans in a mouse model. The mechanisms involve distinct modulation of gut microbiota: Kes promotes P. distasonis and propionate production, while Inu promotes P. goldsteinii and lactate production, both leading to anti-inflammatory cytokine (IL-10) upregulation and Th2 cytokine (IL-4) suppression. These findings suggest that tailored prebiotic combinations could be a safe, dietary strategy for food allergy prevention. However, human studies are needed to confirm efficacy and safety in allergic populations.